Institute for Bioengineering Research
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Publications 2013

1. Alhakamy, N.A. and C.J. Berkland. 2013. “Polyarginine Molecular Weight Determines Transfection Efficiency of Calcium Condensed Complexes.” Molecular Therapeutics, 10(5): 1940-8. Abstract.

2. Alhakamy, N.A., A.S. Nigatu, C. Berkland, and J.D. Ramsey. 2013. “Noncovalently Associated Cell-penetrating Peptides for Gene Delivery Applications.” Therapeutic Delivery, 4(6): 741-57. Abstract.

3. Bohaty, B.S., Q. Ye, A. Misra, F. Sene, and P. Spencer. 2013. “Posterior Composite Restoration Update: Focus on Factors Influencing Form and Function.” Clinical, Cosmetic and Investigational Dentistry, 5: 33-42. Abstract.

4. Cetinel S., H.B. Caliskan, D.T. Yucesoy, E. Yuca, S. Donatan, M. Urgen, N.G. Karaguler, and C. Tamerler. 2013. “Addressable Self Immobilization of Lactate Dehydrogenase across Multiple Length Scales.” Biotechnology Journal, 8(2): 262-72. Abstract.

5. Corni, S., M. Hnilova, C. Tamerler, and M. Sarikaya. 2013. “Conformational Behavior of Genetically-Engineered Dodecapeptides as a Determinant of Binding Affinity for Gold.” The Journal of Physical Chemistry C, 117(33): 16990-17003.

6. Cui, H. and X. Yang. 2013. “Laser Enhanced High-intensity Focused Ultrasound Thrombolysis: an In Vitro Study.” Journal of the Acoustical Society of America, 133(2): EL123-8. Abstract.

7. Cui, H., T. Zhang, and X. Yang. 2013. “Laser-enhanced Cavitation during High Intensity Focused Ultrasound: An In Vivo Study.” Applied Physics Letters, 102(13): 133702. Abstract.

8. Dormer, N.H., V. Gupta, A.M. Scurto, C.J. Berkland, and M.S. Detamore. 2013. “Effect of Different Sintering Methods on Bioactivity and Release of Proteins from PLGA Microspheres.” Materials Science and Engineering Part C, 33(7): 4343-51. Abstract.

9. El-Gendy, N.A., A. Kaviratna, C.J. Berkland, and P. Dhar. 2013. “Delivery and Performance of Surfactant Replacement Therapies to Treat Pulmonary Disorders.” Therapeutic Delivery, 4(8): 951-80. Abstract.

10. Fakhari, A. and C. Berkland. 2013. “Applications and Emerging Trends of Hyaluronic Acid in Tissue Engineering, as a Dermal Filler, and in Osteoarthritis Treatment.” Acta Biomaterialia, 9(7): 7081-92. Abstract.

11. Fakhari, A., Q. Phan, S.V. Thakkar, C.R. Middaugh, and C. Berkland. 2013. “Hyaluronic Acid Nanoparticles Titrate the Viscoelastic Properties of Viscosupplements.” Langmuir, 29(17): 5123-31. Abstract.

12. Misra, A., and P. Poorsolhjouy. 2013. "Micro-macro Scale Instability in 2D Regular Granular Assemblies." Continuum Mechanics and Thermodynamics. doi:10.1007/s00161-013-0330-9.

13. Misra, A., R. Parthasarathy, V. Singh, and P. Spencer. 2013. "Micro-poromechanics Model of Fluid-saturated Chemically Active Fibrous Media." Zeitschrift of Angewandte Mathematik und Mechanik (August).

14. Misra, A., R. Parthasarathy, V. Singh, and P. Spencer. 2013. "Poromechanics Parameters of Fluid-saturated Chemically Active Fibrous Media Derived from a Micromechanical Approach." Journal of Nanomechanics and Micromechanics 3(4): 04013002.

15. Mirsa, A., and V. Singh. 2013. "Micromechanical Model for Viscoelastic-materials Undergoing Damage." Continuum Mechanics and Thermodynamics 25 (2-4): 343-358. doi:10.1007/s00161-012-0262-9.

16. Mozioglu, E., M. Akgoz, C. Tamerler, and Z. T. Kocagoz. 2013. "A Simple Guanidium Isothiocyanate Method for Bacterial Genomic DNA Isolation." Turkish Journal of Biology 38: 125-129.

17. Sestak, J., S. Thati, L. Northrup, M. Mullins, T.J. Siahaan, and C. Berkland. 2013. “Single-Step Grafting of Aminooxy-Peptides to Hyaluronan: A Simple Approach to Multifunctional Therapeutics for Experimental Autoimmune Encephalomyelitis.” Journal of Controlled Release, 168(3): 334-40. Abstract.

18. Singh V., A. Misra, R. Parthasarathy, Q. Ye, J.G. Park, and P. Spencer. 2013. “Mechanical Properties of Methacrylate Based Model Dentin Adhesives: Effect of Loading Rate and Moisture Exposure.” Journal of Biomedical Materials Research Part B: Applied Biomaterials, 101(8): 1437-43. Abstract.

19. Suekama, T.C., V. Aziz, Z. Mohammadi, C. Berkland, and S.H. Gehrke. 2013. “Synthesis and Characterization of Poly (N‐vinyl formamide) Hydrogels – A Potential Alternative to Polyacrylamide Hydrogels.” Journal of Polymer Science Part A: Polymer Chemistry, 51(2): 435-45.

20. Thaiboonrod, S., C. Berkland, A.H. Milani, R. Ulijn, and B.R. Saunders. 2013. “Poly(vinylamine) Microgels: pH-Responsive Particles with High Primary Amine Contents.” Soft Matter, 9(15): 3920-30.

21. Yazici, H., H. Fong, B. Wilson, E.E. Oren, F.A. Amos, J.S. Evans, H. Zhang, M.L. Snead, M. Sarikaya, and C. Tamerler. 2013. “Biological Response on Titanium Implant Surface Functionalized with Modular Peptides.” ACTA Biomaterilia, 9(2): 5341-52. Abstract.

22. Ye, Q., R. Parthasarathy, F. Abedin, J.S. Laurence, A. Misra, and P. Spencer. 2013. "Multivariate Analysis of Attenuated Total Reflection-fourier Transform Infrared (ATR/FTIR) Spectroscopic Data to Confirm Phase Partitioning in Methacrylate-based Dentin Adhesive." Applied Spectroscopy, 67(12): 1473-8.

23. Zhang, T., H. Cui, C.Y. Fang, L.J. Su, S. Ren, H.C. Chang, X. Yang, and L.M. Forrest. 2013. “Photoacoustic Contrast Imaging of Biological Tissues with Nanodiamonds Fabricated for High Near-Infrared Absorbance.” Journal of Biomedical Optics, 18(2): 026018. Abstract.

1. Misra, A., O. Marangos, R. Parthasarathy, and P. Spencer. 2013. "Micro-scale Analysis of Compositional and Mechanical Properties of Primary Tooth Dentin using Homotopic Measurements." In Vol. 4, Biomedical Imaging and Computational Modeling in Biomechanics. 131-141. Springer.

2. Roberts, L. A., and A. Mirsa. 2013. "Reliability Based Design of Drilled Shafts: LRFD and Performance-based Design." In Modern Geotechnical Design Codes of Practice - Development, Calibration & Experiences. 183-194. IOS Press.

3. Spencer, P., Qiang Ye, Jong-Gu Park, R. Parthasarathy, O. Marangos, A. Misra, B. Bohaty, V. Singh, and J. Laurence. 2013. "Dentin/adhesive Interface in Teeth." In Structural Interfaces and Attachments in Biology. 133-152.

1. Abedin, F.S., Q. Ye, P. Spencer, R. Parthasarathy, J. L. Laurence, and A. Misra. 2013. "Hydrophilic-rich Phase in Dentin Adhesive: Photo-polymerization and Critical Water Content." At Abstract #1544, IADR/AADR/CADR 2013 Annual Meeting, March, Seattle, Washington.

2. Hnilova, M., D. Yucesoy, C. Sarikaya, and C. Tamerler. 2013. "Controlling Biological Functionalization of Surfaces by Engineered Peptides." In Biomaterials Science – Processing, Properties and Applications III in Ceramic Transactions, Vol. 242, ACerS-Wiley, John Wiley and Sons, New Jersey, edited by R. Narayan, A. Bandyopadhyay, and S. Bose. ISBN: 978-1118-75103-9.

3. Schwartz, C., S.L. Kieweg, C. Weiner, and S. Wilson. 2013. “Obstetrician Hand Pressures during Mock Deliveries.” American Society of Mechanical Engineers (ASME) Summer Bioengineering Conference, Sunriver, Oregon, June.

4. Spencer, P., Q. Ye, R. Parthasarathy, V. Singh, A. Misra, and J. S. Laurence. 2013. "Structure/Property of Model Dentin Adhesives Exposed to Wet Environments." At Society for Biomaterials, April, Boston, MA.

5. Talbi, Z. and S.L. Kieweg. 2013. “The Impact of Tissue Viscoelasticity on the Flow Dynamics of an Anti-HIV Microbicidal Gel: Numerical Simulations.” American Society of Mechanical Engineers (ASME) Summer Bioengineering Conference, Sunriver, Oregon, June.

6. Ye, Q., F. Abedin, P. Spencer, R. Parthasarathy, A. Misra, and J. S. Laurence. 2013. "Photo-polymerization Kinetics of Hydrophilic-rich Phase Mimic in Dentin Adhesive." At Society for Biomaterials 2013 Annual Meeting, April Boston, MA.